@[R language|Data visualization|Data processing|Rumen microbiota]
Rrumen is a collection of R functions for rumen microbial data analysis. These functions are still under development and may not suitable for daily use. R environment and extra packages are required for running this functions
- summarySE: Gives count, mean, standard deviation, standard error of the mean, and confidence interval (default 95%)
- gerrorbar: Errorbar plotting using ggplot2 graphic system
- gRDAplot: Redundancy analysis ploting using ggplot2 graphic system
- calcSampleSizeForRCT: Calculating the power of a randomised control trial
- calcPowerForRCT: Calculate the number of sampe size for randomized control trial
summarySE (data=NULL, measurevar, groupvars=NULL, na.rm=FALSE, conf.interval=.95, .drop=TRUE)gerrorbar (data, xvars, yvars, se, group, smoothline = F, pd = 0.5, errorbarwidth = 0.5, pointsize = 3, linesize = 1.3, ylimits = NULL, legendlabels = NULL, legendnames = NULL, xlab = NULL, ylab = NULL, title = NULL, legendjustification = c(1,0), legendposition = c(1,0))gRDAplot (x, y, group, scale = F, method = 'RDA', pointsize = 2.5, title = NULL)calcSampleSizeForRCT (alpha, gamma, piT, piC, p=0)calcPowerForRCT (alpha, piT, piC, n)- gerrorbar
- gRDAplot ![gRDAplot] (https://raw.githubusercontent.com/seashore001x/MarkdownPic/master/RDA_ggplot.png)