PhilPalmer

AutoPlate

RShiny app to automate the analysis of 96-well plates such as the fitting of dose-response curves for Pseduotype Micro Neutralisation (pMN) assays

attentive-parapred

Code for Attentive cross-modal paratope prediction

docs

Notes for everything I know

lightdock-nf

Nextflow pipeline to run LightDock for protein-protein docking

utils

Random scripts

about-common-mechanism

R Markdown for Understanding the Common Mechanism and Suggestions for Improvement

Academia-hugo

biorisk-botecs

Back-of-the-envelope calculations (BOTECs) assessing different pandemic risks

biosecurity-trends

Analysis of trends in biosecurity

blog

My personal homepage built using the Hugo Academic Theme

cancer-prediction-pp502

configs

Config files used to define parameters specific to compute environments at different Institutions

cv

[LaTeX] My academic CV

CV-2

My curriculum vitae (CV) written using LaTeX.

data-downloader

Nextflow pipeline to download files using axel

deepvariant

Google's DeepVariant variant caller as a Nextflow pipeline

deepvariant-1

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

DeepVirFinder

Identifying viruses from metagenomic data by deep learning

genomad

geNomad: Identification of mobile genetic elements

github-stats

h3agwas

GWAS Pipeline for H3Africa

nf-fastq-dumper

Dump all fastqas from SRA project ID - just that

parapred

Paratope Prediction using Deep Learning

phewas

Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package

PhilPalmer

RiboDetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

snps

tools for reading, writing, merging, and remapping SNPs

STRONG

Strain Resolution ON Graphs

vertebrate_host_jumps

viral-mutation

Language modeling of viral evolution