Phenobase / phenobase_data

Testing processing phenobase records

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Getting Setup

# first time only: install a python version
pyenv install 3.11.4

# first time only: Create a virtual environment for futres-pyenv
pyenv virtualenv 3.11.4 phenobase

# initialize each time thereafter: automatically set futres-api to current directory when you navigate to this directory
pyenv local phenobase

Running the pipeline

Note: See https://github.com/biocodellc/ontology-data-pipeline to get started. This needs to be downloaded in the appropriate location

python ../ontology-data-pipeline/pipeline.py -v --drop_invalid  sample_input.csv sample_data/output https://raw.githubusercontent.com/futres/fovt/master/fovt.owl config

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Testing processing phenobase records


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