PeterZZQ

scMoMaT

CellPath

CeSpGRN

CeSpGRN: Inferring cell specific GRN using single-cell gene expression data

scDART

VeloSim

This package simulates single cell RNA sequencing data during cell developmental process, the simulation includes unspliced RNA count, spliced RNA count, RNA velocity and cell developmental pseudo-time. The simulation can be used to benchmark computational methods including trajectory inference and RNA velocity inference.

dyngen_simu

Simulator setting for RNA velocity generation

SERGIO_dynamic

Generate single cell dataset during cell differentiation

Symsim2

Extended-Symsim: generating simulated scRNA-Seq and scATAC-Seq data with continuous trajectory

_PeterZZQ.github.io

CellPath_test

Test of CellPath

DCH-ILP

Parallel ILP heuristic for large PPI network reconstruction

gene_orthologs_analysis

PeterZZQ.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

pipline_integration

Preprocessing pipeline for scATAC-Seq and scRNA-Seq integration

prostate_cancer_scripts

scDART_test

test code for scDART

scREBOUND_test

SpatialDE

Test genes for Spatial Variation

starter-hugo-academic