Peter554 / StainTools

Tools for tissue image stain normalisation and augmentation in Python 3

Peter554/StainTools Issues

numpy.linalg.LinAlgError when calling transform
Updated 3 years ago2
Problem of using StainTools for a tensor input
Updated 4 years ago
Question about Normalization for Immunohistochemical Stainings
Updated 4 years ago
GPU accelerate？
Updated 4 years ago
SPAMS dependency / is spams lasso the slowest part in the whole thing?
Closed 6 years ago5
MultiProcessing
Updated 4 years ago3
omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
Updated 4 years ago
Missing to scale stain concentration in VahadaneNormalizer??
Closed 6 years ago3
bad_array_new_length via vahadane/macenko on very large image
Updated 5 years ago
Failed building wheel for spams
Updated 5 years ago1
ModuleNotFoundError after installation
Closed 5 years ago1
Copyright and usage question
Closed 5 years ago2
Principal Eigen vectors inversion, based on the principal eigen vector
Closed 5 years ago5
Pip install broken
Closed 5 years ago7
AssertionError: Negative optical density.
Closed 5 years ago10
AttributeError: module 'staintools' has no attribute 'BrightnessStandardizer'
Closed 5 years ago2
The software stops when have a empty tissue image when I tried to process hundreds of images
Closed 5 years ago3
ModuleNotFoundError after installation
Closed 6 years ago3
About stain normalization speed.....
Closed 6 years ago1
Python 2 compatibility
Closed 6 years ago2
Negative optical density issue
Closed 6 years ago1
Floating point exception (core dumped)
Closed 6 years ago13
stain augmentation seems to modify contrast/intensity but not hue
Closed 6 years ago1
Make `pip install` great again (2) pip install documentation?
Closed 6 years ago1
Edit contribution.md
Closed 6 years ago1
No such file or directory: 'VERSION'
Closed 6 years ago1
Can you update your image and give more about how to use it？
Closed 6 years ago1
Abstract class for normalizers?
Closed 6 years ago6
Move RJ to normalizers
Closed 6 years ago5
Error with division of zero in vahadane staining
Closed 6 years ago2
Reasoning behind using spams package for stain concentrations?
Closed 6 years ago1
I use your code ,But it does not have a good effect
Closed 6 years ago6
spams??
Closed 6 years ago4
How to preserve the normalized picture?
Closed 6 years ago3
A bug??
Closed 6 years ago3
rgb-od and od-rgb
Closed 6 years ago