Peter-Two-Point-O

Peter E Chen's starred repositories

POUTINE

POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

Language:JavaGPL-3.0900

gggenomes

A grammar of graphics for comparative genomics

Language:RNOASSERTION57400

hybracter

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

Language:PythonMIT8400

Query.jl

Query almost anything in julia

Language:JuliaNOASSERTION39300

emoGG

:chart_with_upwards_trend::heart_eyes_cat: Emoji in ggplot2 :heart_eyes_cat::chart_with_upwards_trend:

Language:RMIT21000

Picocli is a modern framework for building powerful, user-friendly, GraalVM-enabled command line apps with ease. It supports colors, autocompletion, subcommands, and more. In 1 source file so apps can include as source & avoid adding a dependency. Written in Java, usable from Groovy, Kotlin, Scala, etc.

Language:JavaApache-2.0481900

cursor

The AI Code Editor

2073400

transit

Repository for the TRANSIT and TPP tools developed by the Ioerger Lab

Language:PythonNOASSERTION1900

bedtools2

bedtools - the swiss army knife for genome arithmetic

Language:CMIT91800

plotly.java

A third-party Java wrapper for plotly.js

Language:JavaApache-2.01500

TornadoVM

TornadoVM: A practical and efficient heterogeneous programming framework for managed languages

Language:JavaApache-2.0116200

TornadoQSim

High-performance and modular quantum simulator in Java

Language:JavaApache-2.01600

muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Language:C++GPL-3.018100