Paul R Johnston's repositories
silakka54_wifi
firmware
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
clinPK
Equations and tools for clinical pharmacokinetics
cloud-span-theme
Cloud-Span Web Style Theme
configs
Config files used to define parameters specific to compute environments at different Institutions
DrosEU_pipeline
Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
guppy_on_slurm
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
gwas
Course materials for "Genome Wide Association Studies (GWAS)"
legacy_ct_modelling
Modelling individual-level viral kinetics using data from the LEGACY study
NanoVarBench
Evaluating Nanopore-based bacterial variant calling
notebooks
Our World In Data jupyter notebooks
optimizing-bottlenecks
Maximizing the rate of microbial adaptation under population bottlenecks, using both analytical and simulation techniques
osx-keyboard-layout-german-no-deadkeys
A German OS X keyboard layout that eliminates deadkeys
PDfunction
scripts for reproducing figures
RareFold
Structure prediction and design of proteins with noncanonical amino acids
sicp
XML sources of SICP and SICP JS, and support for generating Interactive SICP JS, PDF, e-book and comparison editions
silakka18
Direct pin 16 button macro pad with rotary encoder support.