Paul R Johnston's repositories
BacGWASim
A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
cloud-span-theme
Cloud-Span Web Style Theme
configs
Config files used to define parameters specific to compute environments at different Institutions
DrosEU_pipeline
Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
gaw
genome assembly workshop
grayscale-theme
Jekyll theme based on Grayscale Start Bootstrap theme
guppy_on_slurm
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
legacy_ct_modelling
Modelling individual-level viral kinetics using data from the LEGACY study
optimizing-bottlenecks
Maximizing the rate of microbial adaptation under population bottlenecks, using both analytical and simulation techniques
osx-keyboard-layout-german-no-deadkeys
A German OS X keyboard layout that eliminates deadkeys
PDfunction
scripts for reproducing figures
prj_example_data
Some data for use with examples
ResazurinMIC
upload data and analysis pipeline
smsk_trinotate
Snakemake workflow to run transdecoder + trinotate
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly