Keep on updating
Components
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Sequence.pm
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gcContent.pl Calculate the GC content of a given .fa file
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fragileCodonAminoUsage.pl Calculate the percentage of fragile codons / amino acids
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getFaFromBed.pl Get sequence.fa given .bed
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getFaSeqUp2Subseq.pl Retrive the part of the whole sequence, from start to the given subseq
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getRevComFa.pl Get the reverse compliment seq
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getSeqFromGPE.pl Retrive seq given structure.gp(e)
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getSeqLengthFromGPE.pl Get seq length given structure.gp(e)
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pickFaGivenName.pl Retrive seq.fa given name from multiseq.fa
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translateNuc.pl Tranlate nucleotide.fa to aa