Sean Peldom Zhang's repositories
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
Peplib_Generator
The one model for genesis of peptide ligands
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
PARP1_inhibitor_optimizer
This is a model find optimized PARP1 inhibitor based on ORGANIC
AiGEM_TeamHeidelberg2017
The AiGEM software suite of Team Heidelberg 2017
CSU_CHINA_2020_Modeling
This is the iGEM team project model of CSU_CHINA_2020
Essay_For_Molecular_Generation
This repo have a tendency to provide the newest paper about molecular generation or evolution, it will also be convenient for everyone to get info about Drug Discovery).
My_2021_MCM-ICM_A_solution
this is a solution program of 2021 MCM/ICM problem A
transformerCPI
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
graph-based-deep-learning-literature
links to conference publications in graph-based deep learning
RFdiffusion
Code for running RFdiffusion
alphafill
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
amorehead
My GitHub profile header.
awesome-jax
JAX - A curated list of resources https://github.com/google/jax
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
cadee
CADEE: Computer-Aided Directed Evolution of Enzymes
ColabDesign
Making Protein Design accessible to all via Google Colab!
ColabFold
Making Protein folding accessible to all via Google Colab!
pyswarms
A research toolkit for particle swarm optimization in Python
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold