Peer Herholz's repositories
mindboggle
Automated anatomical brain label/shape analysis software (+ website)
academic-kickstart
Easily create a beautiful website using Academic and Hugo
neurodesign
Source code for pypi package neurodesign
bids-starter-kit
Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets
docker_ws_os_frankfurt
Repository for the docker workshop conducted at the University of Frankfurt in April 2019.
ECoG_img_pipe_docker
Repo for docker related endeavours wrt the ECoG imgage pipeline of the Chang Lab @ UCSF
EEGprep
A BIDSapp for automated preprocessing of EEG data.
LAB-QA2GO
LAB–QA2GO - A free, easy-to-use toolbox for the quality assessment of magnetic resonance imaging data
meegnobis
Temporal Representational Similarity Analysis in Python
Mindboggle-MixedModels
A BIDSapp for automated mixed model analyses of mindboggle outputs.
module-dataprocessing
A module for reproducible data processing
mridefacer
Helper to aid de-identification of MRI images (3D or 4D)
neurodatascience.github.io
NeuroData Science Lab Website
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
nilearn
Machine learning for NeuroImaging in Python
nipype
Workflows and interfaces for neuroimaging packages
nistats
Modeling and statistical inference on fMRI data in Python
niwidgets
Neuroimaging widgets for jupyter notebooks
phys2bids
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart.
py_depthsampling
Python functions for visualising fMRI cortical depth sampling results created with CBS tools.
pybids
Python tools for querying and manipulating BIDS datasets.
smobsc
Source repository for our book on open methods
workshop_magdeburg
Materials (slides, notebooks, Dockerfile) for a two day workshop focusing on the utilization of python for neuroimaging.