Pearl Liu's repositories
Organoid_Human_blastoid
Blastocyst-like structures generated from human pluripotent stem cells
R-for-Data-Science-2e-
R for data science: a book
single-cell-best-practices
https://www.sc-best-practices.org
adv-r
Advanced R: a book
bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
cellxgene
An interactive explorer for single-cell transcriptomics data
Drop-seq
Java tools for analyzing Drop-seq data
groovy
Apache Groovy: A powerful multi-faceted programming language for the JVM platform
metrics
📊 An infographics generator with 30+ plugins and 300+ options to display stats about your GitHub account and render them as SVG, Markdown, PDF or JSON!
Notes_Perl
Perl language learning record
Pearl520
Profile
rdocumentation-2.0
📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
reticulate
R Interface to Python
scanpy
Single-cell analysis in Python. Scales to >1M cells.
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
subread
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.
tracjectory_slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
Training-modules
Materials for short, half-day workshops
trajectory_scvelo
RNA Velocity generalized through dynamical modeling
warp
WDL Analysis Research Pipelines