Beast code in Giters

Pavri lab's repositories

Nextflow workflow for basic HiC data processing

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Nextflow workflow for basic RepliSeq data processing

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This repo contains code and instructions on various possible analyses of Hi-C data

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Nextflow workflow for reproducible SNS-seq peak calling

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Nextflow workflow to reproducibly quantify NS-seq reads in called initiation sites and classify them according to specific rules

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repository for Tri-C and Micro-C data related code for Costea and Schoeberl et al.

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Nextflow workflow for reproducible annotation initiation sites with genetic features

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qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

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Repository for code of analyses presented in the paper

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Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

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