Beast code in Giters

PaulingLiu's starred repositories

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Language:PythonBSD-3-Clause41900

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

Language:PythonMIT202900

Nebulosa

R package to visualize gene expression data based on weighted kernel density estimation

Language:R8800

RISC

A R package for integrated scRNA-seq data analysis using the RPCI algorithm

Language:RNOASSERTION4300

seurat-wrappers

Community-provided extensions to Seurat

Language:RGPL-3.030500

rigraph

igraph R package

Language:R55400

scibet

A portable and fast single cell type identifier

Language:RBSD-3-Clause6200

ROGUE

Assessing the purity of single cell population

Language:RBSD-3-Clause10800

nichenetr

NicheNet: predict active ligand-target links between interacting cells

Language:R48700

ggbeeswarm

Column scatter / beeswarm-style plots in ggplot2

Language:RGPL-3.054000

mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

Language:PythonBSD-3-Clause7200

scvelo

RNA Velocity generalized through dynamical modeling

Language:PythonBSD-3-Clause41800

scDVA

An R shiny based tool used for single cell RNA-seq data visualization and analysis.

Language:R3200