Parker Dow's repositories
bio_embeddings
Get protein embeddings from protein sequences
Language:HTMLMIT000
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Language:Jupyter NotebookMIT000
Single_Cell_Seq_Analysis
Current Testing Pipeline For Running CellRanger and MIXCR Single Cell TCRSeq (WIP)
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tcr-bert
Large language modeling applied to T-cell receptor (TCR) sequences.
Language:Jupyter NotebookApache-2.0000
TCRconv
TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
Language:Jupyter NotebookMIT000