Panos Firbas's repositories
bamToBigWig
Directly create a bigwig file with signal derived from a sorted and indexed bam file.
gimmemotifs
GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and clusters these motifs using the WIC similarity scoring metric.
MarkovChainRandomWords
A class to generate Markov-chain random words from a given list of words.
intro.js
A better way for new feature introduction and step-by-step users guide for your website and project.
Language:JavaScript000
jupyter_on_hpc
some configuration to run jupyter notebooks as a scheduled job on HPC
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)