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PankratzLab's repositories

NGS-PCA

Methods for running PCA on NGS data

Language:JavaGPL-3.03 4 2

bakeoff

Language:Shell2 10

DonorCheck

Utility for validating donor typing entries to DonorNet

Language:Java2 10 17

GenScorePipeline

Genetic Score Pipeline, Merge Extract Pipeline

Language:Java1 3 8

NGS-TL

Estimate telomere length (TL) from whole genome sequencing (WGS)

Language:ShellGPL-3.01 40

cue

Deep learning framework for SV calling and genotyping

Language:Jupyter NotebookMIT000

ExomeDepthExample

Example for running exomeDepth

Language:RMIT040

Genvisis-Docs

Documentation for Genvisis

030

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

Language:Java010

IGV-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

Language:PythonGPL-3.0010

IGV-VM

Build IGV instance that can take screenshots without a GUI or X11

Language:DockerfileGPL-3.0030

igv-xvfb

IGV with Xvfb

Language:DockerfileGPL-3.0020

jFlow

Language:JavaGPL-2.0030

MatchSamples

Language:JavaGPL-2.002 5

mosdepth-docker

Language:wdlMIT020

NativeJFileChooser

Native file chooser for Swing using JavaFX if available

Language:JavaBSD-2-Clause010

SuperNovo

DeNovo Mutation Identification and Validation

Language:JavaApache-2.003 1

warp

WDL Analysis Research Pipelines

Language:WDLBSD-3-Clause020

Genvisis-Website

Text and images for the Genvisis webpage

Language:JavaScript020

kd-match

kd-tree matching for nearest neighbor selection

Language:JavaGPL-3.0000

long-read-plot

Plots for long read sequencing data

GPL-3.0000

pankratzlab.github.io

000

RUFUS

RUFUS k-mer based genomic variant detection

Language:C++000