PalamaraLab

HapNe

Haplotype-based inference of recent effective population size in modern and ancient DNA samples

quickdraws

EpiNN_data

EpiNN

coalNN_data

Files needed for CoalNN experiments: genetic maps, demographies, UKBB allele frequencies.

arg-needle-lib

ASMC

Ascertained Sequentially Markovian Coalescent

coalNN

Convolutional neural network for TMRCA and allele age inference.

arg-needle-scripts

PrepareDecoding

Tool to compute decoding quantities

ASMC_data

Public data for use with ASMC

DataModule

Data module and utilities that will underpin other software from the Palamara Lab

OxStatGen22

Computational Exercise for the Oxford 2022 Statistical Genetics Summer School

ASMC_legacy

Ascertained Sequentially Markovian Coalescent

FastSMC

FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets. https://doi.org/10.1038/s41467-020-19588-x

vcpkg-registry

Registry for hosting C++ packages for installation via vcpkg

ARGON

Fast, whole-genome simulation of the discrete time Wright-Fisher process