Patrick Styll's repositories
NLP-Admission-Notes
The aim is to train an advanced NLP model that can efficiently and accurately extract relevant diagnoses and diseases from admission notes. The dataset containing pseudonymized admission notes is publicly available here: http://trec-cds.org/topics2021.xml
Disease-Detection-NLP
The goal of this project is to implement a BERT-based architecture to successfully extract diseases and medical conidtions from free-text.
Global-Pair-Wise-Sequence-Alignment
The global pairwise sequence alignment algorithm is a bioinformatics method that aligns two sequences from start to finish to identify the optimal sequence alignment based on predefined scoring parameters. Fun example of Parallelization with OpenMP.
MultiCardioNER-2024
This repository serves to contain my submissions for my participation at MultiCardioNER 2024.
EHR-Generator
A pipeline that extracts multiple medical entities from patient admission notes, maps them to their respective ICD/NDC code and outputs a standardized FHIR structure.
ExplainableML-Lab
Experiments with interpreting techniques, such as SHAP and LIME, to get insight into the trade-off between predictive performance and explainability.
Fruit-Classification
Fun project with the goal of classifying fruits in real time through a convolutional neural network.
NLP-BERT-LSTM
This project is aimed to experiment with various Deep Learning architectures for Natural Language Processing.
Group-ICA-dHCP
The goal is to perform grouped Independent Component Analysis (ICA) to extract meaningful signals from neonatal brains via the developing Human Connectome Project (dHCP). These Independent Components are planned to be used as an input for SwiFUN, to extract task-related information from resting-state functional Magnetic Resonance Images (rsfMRI).
Brain-Score-Example
This repository shows an example of using the Brain-Score-Vision package, and demonstrates a small experiment of how alignment of ANNs to neuroanatomy (i.e. visual cortex) can enhance brain-likeness.
ENIGMA_OCD_MBBN
Focusing on integrating a Perceiver-IO-like decoder on top of MBBN.
SwiFT-BERT
Implementing a SwiFT-based framework to make use of temporal understanding for brain fMRI behavioural outcomes in timeseries.
SwiFUN
Official repo for SwiFUN