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PYangLab / SVGbench

Evaluating spatially variable gene detection methods for spatial transcriptomics data

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SVGbench

This repo hosts the source code and scripts for evaluating spatially variable gene detection methods for spatial transcriptomics data.

Fig1_evaluation workflow_v4

All scripts containing the pre-processing, functions to run all methods in the manuscript and plots are provided.

Reference:

Carissa Chen+, Hani Jieun Kim+,*, and Pengyi Yang* (2024) Evaluating spatially variable gene detection methods for spatial transcriptomics data, Genome Biology, 25, 18, FullText.

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Evaluating spatially variable gene detection methods for spatial transcriptomics data

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Language:R 81.7%Language:Python 18.3%