Authors: Pengyi Yang, Andrew Oldfield, Taiyun Kim*, Andrian Yang*, Jean Yee Hwa Yang, Joshua W.K. Ho
* Developer of website
Contact: j.ho@victorchang.edu.au and pengyi.yang@sydney.edu.au
Copyright © 2017, Victor Chang Cardiac Research Institute; School of Mathematics and Statistics, University of Sydney.
PAD clustering is a web resource to identify co-localization sites of binding sites at regions proximal and distal regions to gene promoters.
- Python v2.7
- MySQl v5.7.10
- MySQL-python v1.2.5
- Django v1.9
- django-crispy-forms v1.6.0
- django-multiupload v0.5
- numpy v1.10.4
- plotly v1.9.5
- pybedtools v0.7.5
- bedtools v2.25.0
- scipy v0.17.0
Setup; Please find TF peak files in Data folder for download.
Yang, P., Oldfield, A., Taiyun, K., Yang, A., Yang, J., Ho, J. (2017). Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. Bioinformatics, 33(3), 1916-1920.