PNorvaisas / celegans_segmentation

Segmentation of C. elegans images

Celegans_segmentation

Segmentation of C. elegans images. All key functions are saved in src directory

4-way screen nematode fluorescence analysis

• Biolog_acs-2_screen.ipynb - Nematode identification for the 4-way screen
• Worm_identification.ipynb - Troubleshooting and testing with individual files

C. elegans fluorescence analysis on TF knockouts

• TF_acs-2.ipynb - Troubleshooting and testing with individual files
• TF_acs-2_screen.ipynb - Generate results tables
• TF_screen.py - TF fluorescence screen summary figures