Peter Mahoney's repositories
Puma_IBM
An individual-based genetic model used to assess genetic degradation in an isolated puma population. Used in the following manuscript: http://rspb.royalsocietypublishing.org/content/283/1837/20160957.
EcoApps_ExtinctionVortex_data
The data used to evaluate extinction vortex dynamics in isolated populations of Puma concolor. For a publication citation, see:
SpatialCongruence_CoyoteDeer
Data and code used in: Mahoney et al. 2018. Spatial processes decouple management from objectives in a heterogeneous landscape: predator control as a case study. Ecological Applications.
rAnimalSiteFidelity
rASF, assessing animal site fidelity in R.
slurm-examples
"Examples of using slurm in life sciences workflows using posix file systems and object storage" FredHutch. I only slightly modified the code from FredHutch to allow for data inputs, run multiple models, and merge model output. See internal files in the centipede folder.