PBLab

python-pysight

Create images and volumes from photon lists generated by a multiscaler

neural_collision_detection

Collide vasculature and neurons for fun and profit (?)

rpysight

Real-time 2D/3D rendering of photon streams from a TimeTagger

arrow2

Unofficial transmute-free Rust library to work with the Arrow format

behaviour

ca-analysis-bloodflow

CHIPS

CHIPS, or Cellular and Hemodynamic Image Processing Suite, is an open-source MATLAB toolbox designed to analyse functional images of cells and blood vessels, primarily from two-photon microscopy. Please see the README file, which is displayed at the bottom of this page, for more information.

dff-calc

Calculate dF/F for neural traces, based on https://www.nature.com/articles/nprot.2010.169

dm_optimization

Optimize laser wavefront using Alpao's DM69

EP-analysis

Analyze the outputs of the EP algorithm

Eran-Hagai-Project

nalgebra-numpy

Convert between nalgebra and numpy types.

napari

napari: a fast, interactive, multi-dimensional image viewer for python

python-gsheet

Read and write data from Google Sheets

vispy

Main repository for Vispy

WideFlow

Live analysis of propagating waves in wide field imaging

CVM

Continuous Volumetric Microscopy

magicgui

build GUIs from python functions, using magic.

napari-tutorials

tutorials for the napari image viewer