PAMorin

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies

IBDmix

TESS3r_SNPs

R-markdown script for geographic population genetic structure analysis with Tess3r

IBD

Isolation by distance (IBD) analyses for population genetic data.

HWE_LD_Jack_tests

Multi-test corrected tests for LD and HWE, with jackknife analysis to ID genotypes affecting HWE.

sPCA

R Markdown scripts for spatial PCA (sPCA) analysis of genotype data

Structure_Clumpp_Spatial_mapping_R

Rmarkdown scripts and test files for running STRUCTURE analysis, combining replicates with CLUMPP, and generating assignment barplots and spatial interpolation of ancestry coefficient

WhaleGenomics-Synteny