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Oshlack / JAFFA

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

Home Page:https://github.com/Oshlack/JAFFA/wiki

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hg19 reference files for JAFFA version 2

nadiadavidson opened this issue · comments

commented

Make reference for hg19 available (also mouse?)

See if reference tar ball can be made smaller (e.g. some of the files generated locally)

commented

How to change the reference file to hg19(in version 1.09)?

commented

How to change the reference file to hg19(in version 1.09)?
There are some instructions here,
https://github.com/Oshlack/JAFFA/wiki/FAQandTroubleshooting#how-can-i-use-a-genome-other-than-hg38

commented

Update: instruction on how to make the reference files for version 1.0 compatible with version 2.0 are now provided in FAQ on the wiki.