OpenTreeOfLife / opentree

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

http://tree.opentreeoflife.org/

OpenTreeOfLife/opentree Issues

default tree name
Updated 3 months ago
Collections "save a copy" doesn't work
Updated 4 months ago2
Bulk TNRS sorting not working
Updated 4 months ago
Update API docs to include tree collections
Updated 5 months ago
Branch length time units get incorrectly stored
Updated 6 months ago
Update and restore PhyloPic features in synth-tree viewer
Updated 8 months ago
Clean up layout of custom-synth web pages
Updated 9 months ago
"Look up doi" button weirdness
Updated a year ago6
More granular search
Updated a year ago
link to gitter from our contact page needs to be updated
Closed a year ago
In study-study conflict, links go to synth rather than alternative study
Closed a year ago4
Some AJAX errors hidden in Chrome (JSON payload ignored)
Closed a year ago5
File download from curator not working
Updated a year ago1
Add more information about tree branch-length mode based on fossil calibrations?
Updated a year ago1
Taxon names flagged as "hidden" only show up in TNRS if fuzzy matching is on
Updated a year ago
ERROR loading details for this conflicting tree!
Closed a year ago2
Replace dead link to original grant proposal
Updated a year ago1
can we force a re-fetch of a collection if the collection editor view is old or regains focus
Updated a year ago
link outs from tree browser to OneZoom broken
Closed a year ago2
link outs from tree browser: add link to search GBIF for occurrences of a taxon
Updated a year ago
Curator blocks taxon addition of existing names
Closed a year ago2
Does collection refresh fail to detect existing trees?
Updated a year ago1
Should we always mint a new ID when creating a tree or study?
Updated a year ago5
Refreshing a collection should update a study’s `compactRefText`
Updated a year ago
Is the branch rotation in the tree viewer of the curator deterministic?
Updated a year ago1
curator profile page loading seems too slow
Updated a year ago
Naming of mrcaottAottB nodes
Updated a year ago
Show conflict between a study tree and a tree from another study.
Updated a year ago
In the conflict analysis, conflict with multiple nodes leads to a single, broken link
Updated a year ago1
In the conflict analysis, unnamed nodes look like `OTT: {mrcaottXottY}`
Updated a year ago1
Taxonomy browser is broken in latest deployment
Closed 2 years ago5
Issue on new development website on the Add Study page
Closed 2 years ago7
Time to remove our "import from TREEBASE" option when creating a study?
Updated 2 years ago3
Upload pre-mapped OTUs
Updated 2 years ago8
Can't create new study
Closed 2 years ago2
Update all DOI-as-URL values in phylesystem?
Updated 3 years ago1
Update all visible download links to use HTTPS
Updated 3 years ago
Add rate limiting to APIs
Updated 3 years ago
Noob question: What does the taxon label "mrcaott" mean?
Closed 3 years ago2
Taxon ammendment weird behavior
Updated 3 years ago8
Un-map deprecated taxa
Updated 3 years ago1
Adding tree to collection always adds name/label of FIRST tree
Updated 3 years ago
Sequence and Tax file for QIIME2
Closed 4 years ago4
synth MRCA fails with pruned OTTids
Updated 4 years ago
flag deprecated taxa in browser
Updated 4 years ago
we should disable "add new taxon" temporarily
Updated 4 years ago1
Curator Wishlist
Updated 4 years ago2
Bulk TRNS hangs on names with no matches
Updated 4 years ago11
still need rewrite.py
Updated 4 years ago3
Web2py error on "download subtree as newick string"
Closed 4 years ago6