OluwadareLab

Dr. Oluwadare's Bioinformatics Lab 's repositories

HiC-GNN

A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks

Language:Python11 2 5

HiCARN

HiCARN: Resolution Enhancement of Hi-C Data Using Cascading Residual Networks

Language:PythonMIT4 10

ParticleChromo3D

Using Particle Swarm Algorithm for chromosome three-dimensional structure construction

Language:Jupyter Notebook4 1 2

ParticleChromo3D_Plus

A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction

Language:Python3 1 1

Comprehensive_Loop-Caller_Benchmark

Language:Jupyter Notebook200

DeepSplicer

Language:Python2 10

EnsembleSplice

Ensemble Deep Learning for Splice Site Prediction

Language:PureBasic200

TADMaster

TADMaster: A Comprehensive Web-based Tool For Analysis of Topologically Associated Domains

Language:Python2 20

CBCR

CBCR: A Curriculum Based Strategy For Chromosome Reconstruction

Language:MATLAB1 10

CNNSplice

CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks

Language:Python1 20

Robin

Robin: A Comparative Tool for Loop Callers Analysis Leveraging Large Language Models

Language:HTML1 1 13

3DMax

A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data

Language:Java000

ASPECT

ASPECT: Alternative SPlicing Events Classification with Transformer

Language:Python020

ChromeBat

ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction

Language:Python01 1

CNNSpliceWebserver

Webserver for the CNNSplice Project

Language:CSS000

EmbedTAD

Language:Python000

Fungi_3DGenome

Language:Python000

HiCForecast

HiCForecast: Dynamic Network Optical Flow Estimation Algorithm for Spatiotemporal Hi-C Data Forecasting

Language:PythonMIT000

RECSplice

RECSplice: Splice Site Prediction Using Recurrent Neural Networks

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Robin_documentation

Language:HTML000

ScanChIP-P

Language:Python000

ScHicAtt

ScHicAtt: Single Cell Hi-C Super Resolution Enhancement Using Attention Methods

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SimSCP

SimCSP: A Simple Contrastive Learning Model for Splice Site Prediction

Language:Python030