Oliver-Lorenz-dev's repositories
seroba_validation
Validation data and scripts for new serotypes added to SeroBA2
check_disruptive_mutations
Python script which checks DNA sequences for disruptive mutations
pneumokity_nextflow
Nextflow wrapper for running pneumokity on sanger HPC
seroba
Bugfix Fork of the Original SeroBA
Oliver-Lorenz-dev
Config files for my GitHub profile.
cram_to_fastq_nf
quick nextflow pipeline for custom cram to fastq conversion
nanoseq
Nanopore demultiplexing, QC and alignment pipeline
fasta_tools
small toolkit which can help manipulate fasta files, playing around with some new python libraries.
useful-scripts
useful scripts I've written at work
perl-playground
messing around with perl
pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
DNA-Sequence-Analysis-app
Code from my MSc Bioinformatics CSC8330 module
Biopython
Biopython code I wrote in early-mid 2020
Python-card-games
Python scripts I wrote in 2019/early 2020.
Address_book
Code from my MSc computing foundations of data science module
Genome-scale-data-analytics
Contains DESeq2 RNA-Seq data analysis code
CSC8332-Bio-datascience
Code from my MSc Bioinformatics CSC8332 module (machine learning)