Daniel S Oliveira's repositories
TEs_expression_commandline
Command line used in "Oxidative and radiation stress induce transposable elements transcription in Drosophila melanogaster" study.
drosophila-transposons
Drosophila transposable element canonical sequences
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EDTA
Extensive de-novo TE Annotator
Language:PerlGPL-3.0000
FasTE
A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotator (EDTA), DeepTE, RepeatMasker and RM_TRIPS.
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hyphy
HyPhy: Hypothesis testing using Phylogenies
Language:HyPhyNOASSERTION000
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rosette_tetools
Rosette files required to run TEtools pipeline
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SQuIRE
Software for Quantifying Interspersed Repeat Expression
Language:PythonNOASSERTION000
telescope
Quantification of transposable element expression using RNA-seq
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TuataraTELandscapes
Transposable element landscape figures for the Tuatara genome paper 2020
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