OceaneCsn

DIANE

Dashboard for the Inference and Analysis of Networks from Expression data

CO2_root_networks_inference

Code and data for "A gene regulatory network reveals features and regulators of the root response to elevated CO2 in Arabidopsis", O. Cassan et al., 202X.

CombinatoireRNASeqFeNCO2

M1_Rmarkdown_course

Teaching material for the M1 studients of MIASHS master, university Paul Valéry, Montpellier.

Resume

Personal resume

AraNetBench

Evaluates an inferred regulatory network against state of the art interaction databases in Arabidopsis thaliana

integrative_GRN_N_induction

This work introduces a novel methodology to optimize the intensity of data integration in a hypothesis-driven and gene-specific manner.

Benchmarking_DIANE

Co-expressionNetworkCombinatoire

CO2NutritionAnalysis

DifferentialExpressionAnalysis

DNABiohysics

Genes_enhancers_models

gradientCO2

gwas

gwas_ionome_CO2

Code and partial data for a GWAs on mineral content under elevated CO2

Network_inference_practical_session

Using DIANE to explore RNA-Seq data and infer a Gene Regulatory Network

Network_visualisation

NetworkInference

NetworkInferenceCourse

Teaching material for research trainings and M1 courses about gene regulatory network inference

OceaneCsn.github.io

Personal web page

Optimisation

ProcStoch

ProjetSimADN

RapportStageLIRMM

Apprentissage Statistique pour la prédiction des interactions chromosomiques

sigGENIE3

Gene Regulatory Network Inference with edge significance estimation

SMA_BookTrading

tigress

Trustful Inference of Gene REgulation using Stability Selection

TP_MDP

TPCovoit