OLaprevote

Olivier Laprevote's starred repositories

moviepy

Video editing with Python

Language:PythonMIT12216 254 1480

openmoonray

MoonRay is DreamWorks’ open-source, award-winning, state-of-the-art production MCRT renderer.

Language:CMakeApache-2.04235 70 71

plotnine

A Grammar of Graphics for Python

Language:PythonMIT3926 63 660

tagspaces

TagSpaces is an offline, open source, document manager with tagging support

Language:TypeScriptAGPL-3.03600 97 1349

papers_for_protein_design_using_DL

List of papers about Proteins Design using Deep Learning

GPL-3.01305 109 1

graphein

Protein Graph Library

Language:Jupyter NotebookMIT1007 19 150

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Language:PythonGPL-3.0361 20 273

mordred

a molecular descriptor calculator

Language:PythonBSD-3-Clause345 20 85

ProLIF

Interaction Fingerprints for protein-ligand complexes and more

Language:PythonApache-2.0343 16 137

alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

Language:PythonMIT316 5 23

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

Language:PythonMIT311 15 99

lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Language:PythonGPL-3.0297 12 66

folding_tools

A collection of *fold* tools

MIT277 23 6

viamd

Visual Interactive Analysis of Molecular Dynamics

Language:C++MIT260 11 59

RFDesign

Protein hallucination and inpainting with RoseTTAFold

Language:PythonNOASSERTION231 13 53

LigandMPNN

Language:PythonMIT188 12 28

molcloud

Make a bunch of molecules

Language:PythonMIT91 2 3

design_tools

A compilation of deep learning methods for protein design

90 6 2

PyDSSP

A simplified implementation of DSSP algorithm for PyTorch and NumPy

Language:PythonMIT62 3 4

timed-design

Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis

Language:Python43 4 44

Break-Down-Walls

Firefox extension to allow easier access to information.

Language:JavaScriptUnlicense42 1 1

PGP

Language:Jupyter NotebookApache-2.034 2 1

pocketoptimizer

Binding pocket optimization based on force fields and docking scoring functions

Language:Rich Text FormatNOASSERTION27 3 9

pytc

python program for analyzing isothermal titration calorimetry data

Language:PythonUnlicense26 15 11

fastpdb

A high performance drop-in replacement for Biotite's PDBFile.

Language:RustBSD-3-Clause23 1 4

protease-gcnn-pytorch

Language:Jupyter Notebook1900

CoPriNet

Deep learning for compound price prediction

Language:PythonMIT19 10

ProteinMechanicsDiffusionDesign

Language:Jupyter NotebookMIT18 1 3

aposteriori

DNN based protein design.

Language:PythonMIT7 2 34

230706-blender-workshop

Notes for Blender & Molecular Nodes workshops.

Language:Lua1 20