Computational Biology Specialists from the National Institute of Allergy and Infectious Diseases (NIAID) will be teaching courses on bioinformatics topics and biocomputing tools.
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Angelina Angelova, Ph.D.*
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Tony Armstrong, Ph.D.*
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Phil Cruz, Ph.D.*
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Jingwen Gu, M.S.*
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Brendan Jeffrey, Ph.D.*
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Eric Karlins, Ph.D.*
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Andrew Oler, Ph.D.
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Mariam Quiñones, Ph.D.
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Amit Roy, Ph.D.*
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Poorani Subramanian, Ph.D.*
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Dan Veltri, Ph.D.
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Kurt Wollenberg, Ph.D.*
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Yunhua Zhu, Ph.D.*
* Instructors provide bioinformatics support at the NIAID as employees of Medical Science and Computing, Inc.
| Date (US) | Date (UK) | Instructor | Topic | Course |
|---|---|---|---|---|
| 2/23/21 | 23/02/2021 | A. Oler | Genome browsers | MSB 7104: Online bioinformatics and sequence database |
| 2/24/21 | 24/02/2021 | E. Karlins | Public projects based on human NGS data (Human genome, HapMap, population genetics, variations…) | MSB7105: High Throughput Sequencing and Analysis |
| 2/25/21 | 25/02/2021 | A. Armstrong | Introduction to UNIX and text editing | MSB 7103: Unix & Shell Scripting (3 CU) |
| 2/26/21 | 26/02/2021 | H. Lorenzi | Nucleic Acid Techniques and Tools 1: Intro to NGS and Sanger sequencing | MSB 7101: Molecular Biology for Bioinformatics (Sequencing Technologies; Types of seq libraries; NGS methods & applications; Sequencing data formats) |
| 3/1/21 | 01/03/2021 | A. Armstrong | Introduction to UNIX editors: Vi | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/2/21 | 02/03/2021 | H. Lorenzi | Nucleic Acid Techniques and Tools 1: Intro to NGS and Sanger sequencing - potentially a practical | MSB 7101: Molecular Biology for Bioinformatics |
| 3/3/21 | 03/03/2021 | B. Jeffrey | Processing of aligned reads for RNA-seq | MSB7105: High Throughput Sequencing and Analysis |
| 3/4/21 | 04/03/2021 | M. Quinones | Primary sequence databases | MSB 7104: Online bioinformatics and sequence database |
| 3/5/21 | 05/03/2021 | Y. Zhu | RNA-seq Part II, single-cell RNA-seq & pathway analysis | MSB7105: High Throughput Sequencing and Analysis |
| 3/8/21 | 08/03/2021 | M. Quinones | Primary sequence databases | MSB 7104: Online bioinformatics and sequence database |
| 3/9/21 | 09/03/2021 | J. Gu | Generating data and manipulating objects | MSB7102: R programming and Bioconductor |
| 3/10/21 | 10/03/2021 | A. Angelova | Metagenomics overview | MSB7105: High Throughput Sequencing and Analysis |
| 3/11/21 | 11/03/2021 | A. Armstrong | Introduction to UNIX editors: Vi advanced topics | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/12/21 | 12/03/2021 | P. Subramanian | Generating graphics in R - part I | MSB7102: R programming and Bioconductor |
| 3/15/21 | 15/03/2021 | A. Roy | Manipulating files and data on Linux | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/16/21 | 16/03/2021 | J. Gu | Generating data and manipulating objects | MSB7102: R programming and Bioconductor |
| 3/17/21 | 17/03/2021 | P. Subramanian | Cyber environments for the processing and analysis of NGS data | MSB7105: High Throughput Sequencing and Analysis |
| 3/19/21 | 19/03/2021 | A. Roy | Shell Scripting/Programming | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/22/21 | 22/03/2021 | P. Subramanian | Managing data and simple analyses in the Galaxy cyber-environment (Practical) | MSB7105: High Throughput Sequencing and Analysis |
| 3/23/21 | 23/03/2021 | A. Roy | Shell Scripting/Programming | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/24/21 | 24/03/2021 | D. Veltri | Introduction to R markdown | MSB7102: R programming and Bioconductor |
| 3/26/21 | 26/03/2021 | P. Subramanian | Generating graphics in R - part II | MSB7102: R programming and Bioconductor |
| 3/29/21 | 29/03/2021 | A. Roy | Introduction to Awk and Sed programming | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/30/21 | 30/03/2021 | A. Roy | Introduction to Awk and Sed programming | MSB 7103: Unix & Shell Scripting (3 CU) |
| 3/31/21 | 31/03/2021 | J. Gu | Introduction to statistical analysis in R | MSB7102: R programming and Bioconductor |
| 4/5/21 | 05/04/2021 | J. Gu | Introduction to statistical analysis in R | MSB7102: R programming and Bioconductor |
| 4/6/21 | 06/04/2021 | A. Roy | Protein databases | MSB 7104: Online bioinformatics and sequence database |
| 4/7/21 | 07/04/2021 | A. Roy | Protein databases | MSB 7104: Online bioinformatics and sequence database |
| 4/8/21 | 08/04/2021 | A. Angelova | Metagenomics overview | MSB7105: High Throughput Sequencing and Analysis |
| 4/12/21 | 12/04/2021 | A. Angelova | Functional metagenomics - WGS | MSB7105: High Throughput Sequencing and Analysis |
| 4/13/21 | 13/04/2021 | D. Veltri | Introduction to R markdown | MSB7102: R programming and Bioconductor |
| 4/14/21 | 14/04/2021 | K. Wollenberg | Genetic evolution/diversity mechanisms | MSB 7101: Molecular Biology for Bioinformatics |
| 4/15/21 | 15/04/2021 | M. Quinones | Sequence retrieval tools and advanced literature search (PubMed) | MSB 7104: Online bioinformatics and sequence database |
| 4/19/21 | 19/04/2021 | K. Wollenberg | Genetic evolution/diversity mechanisms | MSB 7101: Molecular Biology for Bioinformatics |
| 4/21/21 | 21/04/2021 | M. Quinones | Sequence retrieval tools and advanced literature search (PubMed) - SRA | MSB 7104: Online bioinformatics and sequence database |
| 4/22/21 | 22/04/2021 | P. Cruz | Cheminformatics – can we support? (Chemical compound – drug discovery) | MSB 7104: Online bioinformatics and sequence database |
| 4/23/21 | 23/04/2021 | Time Available | ||
| 4/26/21 | 26/04/2021 | P. Cruz | Cheminformatics – can we support? (Chemical compound – drug discovery) - potential practical | MSB 7104: Online bioinformatics and sequence database |
| 4/27/21 | 27/04/2021 | M. Quinones | Nucleic Acid Techniques and Tools 2: Practical on Sanger or QC of NGS | MSB 7101: Molecular Biology for Bioinformatics |
| 4/28/21 | 28/04/2021 | M. Quinones | Nucleic Acid Techniques and Tools 2: Practical on Sanger or QC of NGS | MSB 7101: Molecular Biology for Bioinformatics |