ODiogoSilva

TriFusion

Streamlining phylogenomic data gathering, processing and visualization

ElConcatenero

vcf2PCA

Principal component analysis of SNP data with interactive plot

innuca-nf

A nextflow implementation of INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

templates

Set of templates for nextflow and general usage

docker-images

Collection of docker images for HTS analyses

alm

:rose: A :cloud: ready IDE just for TypeScript :heart:

bananas

bioconda-recipes

Conda recipes for the bioconda channel.

cbbs-nf

chewBBACA

BSR-Based Allele Calling Algorithm

CoffeeCK_RNAseq_2017

RNAseq DE analysis of Coffee - C. kahwae system

dragen-gvcf-merging

kallisto-nf

A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools

lifebit-composer-untitled-workflow-8-6eb181

mock-ds

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mompS

Whole genome sequencing (WGS) has revolutionized the subtyping of L. pneumophila (Lp) but calling the traditional sequence based type from genomic data is hampered by presence of multiple copies of the mompS locus. We propose a novel bioinformatics solution for rectifying that limitation, ensuring the feasibility of WGS for cluster investigation.

nextflow

A DSL for data-driven computational pipelines

nextflow-templates

Hosting templates for nextflow workflow manager

pr_template_test

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

pyzenhub

Zenhub python API

qc-nf-test

rads-nf

Nextflow pipeline for processing and analysis of RADseq data for population studies

report-nf

Report aggregate for microbial assembly pipeline

templates-api

tools

Python package with helper tools for the nf-core community.

TriFusion-packager

Control files for TriFusion packaging

TriFusion-tutorials