Joana Fino's repositories
eggNOG_drinker
Gene ontology search and assignment using eggNOG database
bamzinga
Counts the number of reads mapping into different genes using a gff file from the genome and a bam file of alignment
Language:PythonGPL-2.0000
Language:PythonGPL-2.0000
blast2interact
simple script to convert blast hits in csv files ready to fead cytoscape graph creator
Language:PythonGPL-2.0000
hi-c_helper_scripts
helper scripts for transformations of hi-c matrices or samfiles. Also contains scripts that helped transform data, or make input data to circos.
Language:PythonGPL-2.0000
Language:PythonGPL-2.0000
NGS_utilities
several scripts for simple bioinformatic tasks
Language:PythonGPL-2.0000
SpeciesSplit
Separation of sequences of 2 diferent species based on their homologies with other sequences.
Language:PythonGPL-2.0000
splitreads
Script for identification of reads overlapping a rearrangement junction.
GPL-3.0000
Structure_threader
A simple program to paralelize the runs of the "Structure" software.
Language:PythonGPL-3.0000
SVInterpreter_update
Scripts to update SVInterpreter BDs
Language:Python000