NovembreLab

eems-around-the-world

Repo to analyze population genetic data with many different methods

feems

PCAviz

An R package to help in plotting PCA results nicely.

HGDP_PopStruct_Exercise

A classroom exercise using HGDP SNP data to introduce population structure concepts

Novembre_etal_2008_misc

Resources related to Novembre et al (2008) Nature 456:98-101

1000genomes_Selection_Exercise

1000 Genomes Selection Exercise

ggv

admixture

Repository for the admixture software

imputation_exercise

Introductory Workshop for Imputation and GWAS

ancient-sardinia

eems-merge

ggv-api

intro_genotype_proportions_workshop

Intro to RStudio and basic population genetics based on inspecting genotype proportions

NovembreLab.github.io

Novembre Lab Website

montecarloop

Monte Carlo Simulation Utility

ancpy

A python package for ancient DNA

coal-lab

Lab for HVD

ENCprime

ENCprime : Command-line utility for measuring codon bias. Implements methods of Novembre (2002) Mol Biol Evol 19 (8): 1390-1394.

isoscatR

R package for smoothed and continuous assignment testing (SCAT) of genetic samples

raddle

The Raddle software for Rare-Allele-based Distance of Dispersal Estimation, based on Novembre & Slatkin (2009)

RGGV

R package for GGV mapping.