Noble Lab Department of Genome Sciences UW

Pepper

Peptide coefficient predictor

depthcharge

A deep learning toolkit for mass spectrometry

edison

Compute scaffolding accuracy by its edit distance to a reference genome

hic_scaffolder_benchmarks

A benchmarking study exploring the accuracy of popular Hi-C scaffolders.

MSFactor

Impute mass spectrometry data using non-negative matrix factorization

2022_min_HAB

hicrep

A fast implementation of the HiCRep algorithm for computing similarities between pairs of Hi-C matrices.

mokapot-analyses

The code for reproducing the results from "mokapot: Fast and flexible semi-supervised learning for peptide detection"

python-style-demo

A small repository that contains some advice for styling and using Python code.

synmatch

Synmatch - Linking cells across single-cell modalities by synergistic matching of neighborhood structure

2020_cp34h

Code for "Supercooled, subzero, high salinity incubations of Cp34H reveal long-term mitigation strategies and detectable (peptide) biomarkers for life on other icy worlds"

ppx-workflow