NoahWex

anomaly-detection-resources

Anomaly detection related books, papers, videos, and toolboxes

seurat

R toolkit for single cell genomics

every-chatgpt-gui

Every front-end GUI client for ChatGPT

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

datacamp-community-tutorials

Tutorials for DataCamp (www.datacamp.com)

scGPT

scRNA-seq_online

squidpy

Spatial Single Cell Analysis in Python

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

seurat-wrappers

Community-provided extensions to Seurat

scDblFinder

Methods for detecting doublets in single-cell sequencing data

zellkonverter

Conversion between scRNA-seq objects

Libra

ctv-AnomalyDetection

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

SpaGE

Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data

hbca

Code used to process the data of the HBCA project

SpatialMouseAtlas2020

Data processing and analysis scripts for our spatial profiling of embryos using seqFISH

ddqc

Biology-centered data-driven quality control for scRNA-seq

BigSur

BigSurR

Brain-sim

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around