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Nicolas Chiaruttini (NicoKiaru)

NicoKiaru

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Company:EPFL - SV - PTECH - BIOP

Location:Lausanne - CH

Home Page:https://www.epfl.ch/research/facilities/ptbiop/staff/

Twitter:@nKiaru

Github PK Tool:Github PK Tool

Organizations
BIOP

Nicolas Chiaruttini's starred repositories

jdk

JDK main-line development https://openjdk.org/projects/jdk

Language:JavaLicense:GPL-2.0Stargazers:19000Issues:329Issues:0

incubator-fury

A blazingly fast multi-language serialization framework powered by JIT and zero-copy.

Language:JavaLicense:Apache-2.0Stargazers:2723Issues:45Issues:715

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:1275Issues:29Issues:842

map-of-github

Inspirational Mapping

Language:VueStargazers:989Issues:7Issues:17

constructor

tool for creating installers from conda packages

Language:PythonLicense:NOASSERTIONStargazers:452Issues:34Issues:362

ITKElastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

Language:TypeScriptLicense:Apache-2.0Stargazers:192Issues:23Issues:123

sd4j

Stable diffusion pipeline in Java using ONNX Runtime

Language:JavaLicense:UPL-1.0Stargazers:150Issues:10Issues:3

OAD

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:123Issues:18Issues:5

paquo

PAthological QUpath Obsession - QuPath and Python conversations

Language:PythonLicense:GPL-3.0Stargazers:100Issues:10Issues:92

3Dscript

Create 3D/4D animations using a natural language-based syntax

Language:JavaLicense:BSD-2-ClauseStargazers:57Issues:8Issues:33

libczi

libCZI is an Open Source Cross-Platform C++ library to read and write CZI.

Language:C++License:LGPL-3.0Stargazers:48Issues:7Issues:33

BigTrace

FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

Language:JavaLicense:BSD-2-ClauseStargazers:23Issues:5Issues:4

qupath-extension-warpy

ImgLib2 RealTransform brought to QuPath

Language:JavaLicense:Apache-2.0Stargazers:18Issues:7Issues:12

mindstorms

Operate LEGO MINDSTORMS Inventor Hub from your computer

Language:PythonLicense:MITStargazers:18Issues:8Issues:7

napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:11Issues:3Issues:36

brainways

Brainways

Language:PythonLicense:GPL-3.0Stargazers:11Issues:3Issues:2

imagej-ui-swing

ImageJ UI for Java Swing.

Language:JavaLicense:BSD-2-ClauseStargazers:10Issues:27Issues:56

javaconda

Java wrapper for Conda

Language:JavaLicense:BSD-2-ClauseStargazers:8Issues:3Issues:0

TrackMate-StarDist

StarDist detection as TrackMate detectors.

Language:JavaLicense:GPL-3.0Stargazers:7Issues:3Issues:6

jimzMLParser

Java imzML (mass spectrometry imaging) and mzML (mass spectrometry) parser

Language:JavaStargazers:6Issues:4Issues:2

imglib2-cache

Cache interfaces and java.lang.ref based implementation.

License:NOASSERTIONStargazers:6Issues:16Issues:8

FOM_Multiplexed

License:BSD-3-ClauseStargazers:5Issues:2Issues:0

pom-scijava-base

Low-level base POM for all SciJava-based software

License:UnlicenseStargazers:3Issues:9Issues:9

czi-to-ome-xslt

A repository of XSL transform sheets to map CZI metadata to OME.

Language:XSLTLicense:NOASSERTIONStargazers:2Issues:5Issues:10

ABBA-QuPath-post_processing

Scripts for quantification of the data resulting from the ABBA-QuPath pipeline for atlas registration of the serial brain images

Language:IGOR ProLicense:MITStargazers:2Issues:2Issues:0

bvv-playground

playing with BigVolumeViewer LUTs/gamma/render

Language:JavaLicense:BSD-2-ClauseStargazers:2Issues:1Issues:0

QuMark

A standardized benchmark for evaluating QuPath performance

Language:GroovyStargazers:2Issues:2Issues:1

ome-ngff-java

Metadata stubs of the NGFF specification in Java

Stargazers:2Issues:16Issues:3

ome-ngff-java

Metadata stubs of the NGFF specification in Java

Stargazers:1Issues:0Issues:0

DiAna

Distance Analysis plugin for ImageJ

Language:JavaStargazers:1Issues:2Issues:0