NickEngland's repositories

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

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cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

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cwltool

Common Workflow Language reference implementation

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cyvcf2

cython + htslib == fast VCF and BCF processing

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drake

Data workflow tool, like a "Make for data"

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IGoR

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data.

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jobson

A platform for transforming command-line applications into a job service.

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openVirus

aggregation of scholarly publications and extracted knowledge on viruses and epidemics.

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phenocycler-pipeline

PhenoCycler segmentation pipeline

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