Nic-Nic

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

decoupler-py

Python package to perform enrichment analysis from omics data.

FUNKI

FUNctional analysis worKflows Interface

PyWGCNA

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

GSEApy

Gene Set Enrichment Analysis in Python

ttkbootstrap

A supercharged theme extension for tkinter that enables on-demand modern flat style themes inspired by Bootstrap.

progeny-py

PROGENY Python implementation

dorothea-py

Dorothea package in Python

IceR

Quantitative proteomics workflow

mistyR

Multiview Intercellular SpaTial modeling framework

PhysiBoSS

Multiscale simulation of multi-cellular system

data_tools

Collection of Python functions and classes designed to make data scientists' life easier.

svca

atom

:atom: The hackable text editor

pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.