NeuralEnsemble / pype9

Python pipelines to simulate and manipulate neuronal models, and networks thereof, described in NineML (http://nineml.net)

NeuralEnsemble/pype9 Issues

Implement nonlinear synapses in NEST
Updated 6 years ago2
Implement nonlinear synapses in Neuron
Updated 6 years ago
Allow ConnectionParameterSet to have multiple parameters in NEST
Updated 6 years ago
Allow ConnectionParameterSet to have multiple parameters in Neuron
Updated 6 years ago
"Not Supported" Exceptions
Updated 6 years ago1
Implement multiple EventSendPort per cell in Neuron
Updated 6 years ago
Implement multiple EventSendPort per cell in NEST
Updated 6 years ago
Implement Gap junctions for Neuron
Updated 6 years ago
SLI help pages errors
Closed 6 years ago1
How does the CVODE/IDA emit-spike code work?
Updated 6 years ago1
Import kinetics block into nineml.extensions.kinetics
Updated 6 years ago2
Simulation time variable t not offset in dynamics function
Updated 6 years ago2
Escape all 9ML terms in code generation to avoid conflicts with keywords
Updated 6 years ago
Ensure licences are consistent, add author and version information
Updated 6 years ago
Support for playing analog signals into NEST component arrays
Updated 6 years ago
Smooth PSTH in test_network
Updated 6 years ago1
Docstrings
Updated 6 years ago
Add suffixes mechanism/NEST model names to avoid conflicts
Closed 6 years ago1
Specify default starting regime
Closed 6 years ago1
NEST compilation should be cleaned if it failed build
Closed 6 years ago1
Change build information to logger info
Closed 6 years ago1
Gracefully handle name conflicts between generated NMODL/NEST classes
Closed 6 years ago1
Remove 'verbose' options in favour of logger.debug, etc...
Closed 6 years ago1
Write short documentation
Closed 6 years ago1
Code-generation/compilation should only occur on master node
Closed 6 years ago1
Add regime changes to pype9 plot
Closed 7 years ago1
Set random seed consistently in test_network
Closed 7 years ago1
Lazy code generation should be based on differences in build-version (incl. annotations) of 9ML model not timestamps
Closed 7 years ago3
Remove simulation controller class in favour of PyNN state
Closed 7 years ago3
Remove default_properites and initial_states from CellMetaClass
Closed 7 years ago1
Assertion fails when running NEURON implementation with MPI
Closed 7 years ago1
Get network unittests to run in sequence
Closed 7 years ago1
Create travis.yml and link with coveralls
Closed 8 years ago1
Write setup.py script
Closed 8 years ago2
Temporarily remove import code from version 1.0
Closed 8 years ago1
Convert the `pype9` bash script to python
Closed 8 years ago1
NEST compilation directory should be cleaned when solver changes
Closed 8 years ago2
Port to NEST v2.10, NEURON 7.4 and PyNN v8.1 and create Dockerfile
Closed 8 years ago1
Use Sympy's dsolve method to check for explicit solutions of ODEs
Updated 8 years ago
Transitions that occur in the same time step override each other
Closed 8 years ago2
Steady-state solver needs to be implemented
Updated 8 years ago
Modify NEST update method to handle precise spike times
Updated 8 years ago
Implement piecewise expressions in NEST code-gen
Updated 8 years ago
Random seed for NEST implementations is not set properly
Closed 8 years ago1
Multiple output events per timestep
Closed 8 years ago1
Exact time-crossing for t in OnConditions
Closed 8 years ago2
Artificial cells template for NEURON code gen
Closed 8 years ago1
OnCondition transitions need to be implemented
Closed 9 years ago1
Clean up templates so that that they are not split between solvers
Closed 9 years ago1
AnalogPorts should be removed from the CurrentEvents and default current event reinstated
Closed 10 years ago1