Nathan Whelan's repositories
Elimia-pop-genomics
Scripts used in the paper "Population genomics reveals how Pleuroceridae (Gastropoda: Cerithioidea) species respond to habitat degradation"
misc-scripts
Miscellaneous bioinformatics scripts
Lithasia_hubrichti_pop-gen
Scripts from study on Lithasia hubritchti population genomics
Patera
Scripts for a study on the status of Patera nantahala
3RAD_protocols
Lab and protocols for 3RAD data
3RAD_scripts
Data Processing scripts for 3RAD
Stacks_pipeline
An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for phylogenetic/phylogeography programs.
2bRAD-processing
Basic scripts to process raw 2bRAD data
population_genomics_scripts
Scripts used for population genomics projects
2bRAD_utilities
A collection of scripts for analyzing 2bRAD genotyping data.
generateSequences
Scripts to generate site-heterogeneous sequences
Post-HaMStR-Orthology-Script
Orthology Script for Post HaMStR processing for phylogenomics
klib
A standalone and lightweight C library
event-jekyll-theme
Yet another Jekyll Theme
Split_supermatrix_into_partitions
Split a phylogenetic data super matrix into partitions
Order-genes-by-evolutioanry-rate
A python script to rank genes by evolutionary rate based on individual gene trees
make-gene-list
Makes a list of partitions from single gene alignments
Transcriptome-Characterization
Useful python scripts