Nathan Roach's repositories
c_elegans_dRNAseq_analysis
Scripts used in the analysis of C elegans dRNAseq data
bioconda-recipes
Conda recipes for the bioconda channel.
conda-env-builder
Build and maintain multiple custom conda environments all in one place.
conda-env-builder-feedstock
A conda-smithy repository for conda-env-builder.
conda-iuc
Conda recipes maintained by the Galaxy IUC.
conda-lock
Lightweight lockfile for conda environments
conduit_publication_scripts
Scripts and test data used in the evaluation of CONDUIT prior to publication
galaxytools
:microscope::books: Galaxy Tool wrappers
gatk
Official code repository for GATK versions 4 and up
hts-nim
nim wrapper for htslib for parsing genomics data files
Iris
A module for improving the insertion sequences of structural variant calls
meal_randomizer
Randomly pick from tagged recipes to deal with decision paralysis.
pipenv-feedstock
A conda-smithy repository for pipenv.
polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
PublicGalaxyTools
Tools written for Galaxy / GalaxyPro that can be made public
pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
pyo3
Rust bindings for the Python interpreter
rs-gfa
GFA parser in Rust
rust-msbwt
place for building up a msbwt resource in Rust
samwell
Samwell: a python package for using genomic files... well
SpliceAI
A deep learning-based tool to identify splice variants
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
temporary-tools
Non-reproducible, local tools that were installed to cn029
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission