Najlabioinfo's repositories
DockerBIum
Reproducible bioinformatics workspace with docker under Centos7.
ANNOgesic
ANNOgesic is a bacterial transcriptome annotation pipeline based on RNA-Seq.
BHNtools-R
Developing, Trying and Testing R packages.
containers
Bioinformatics containers
easyngs
EasyNGS provide a rich and interactive web application for NGS data processing
mutdetect-pipeline
Mutations Detection Pipeline
ProtAAScann
Protein AA scan interactive tool.
scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
veewee
Easing the building of vagrant boxes
fanofcucumbers
Exploring some cucumbers data with .Net
functional-annotation
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
glance
Hugo StartPage theme Test.
hisq_paired_rnasq
RNA-Seq mini workflow for hiseq paired end read quality check (tested with c.elegans public data).
nextflow_tmpl
Template for workflow by nextflow : SRA downaload example.
NGS_Data_Analysis_Summer2016
Materials for NGS Data Analysis Course Summer 2016
pathogen_memo_app
Flask PostgreSQL Swagger Heroku Pathogen
pynote
Manage notes on the commandline
RASflow
RNA-Seq analysis workflow
rnaflow
A simple RNA-Seq differential gene expression pipeline using Nextflow
snakemake_workflows
Snakemake workflows and wrappers
snaktuto
Snakmake repo for tutorials and tricks
spyre
a web application framework for python
travis-ng
Angular cli template travis build.