NailouZhang's repositories
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
arriba
Fast and accurate gene fusion detection from RNA-Seq data
MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
HBA-DEALS
HBA-DEALS
ViFi
Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
SpliceLauncher
RNAseq pipeline for alternative splicing junctions
dms_tools2
software for the analysis and visualization of deep mutational scanning data
coessentiality
Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
ntEdit
✏️ultra fast and scalable genome assembly polishing
AnalysisScripts
A motley collection of scripts used for analysis of high-throughput sequencing data
tutorials-1
Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
funpipe
A python library for building best practice fungal genomic analysis pipeline
EcTracker
EcTracker: Tracking and elucidating ectopic expression leveraging large scale scRNA-seq studies.
awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
lihang-code
《统计学习方法》的代码实现
nichenetr
NicheNet: predict active ligand-target links between interacting cells
scRepliseq-Pipeline
Docker pipeline for analyzing scRepli-seq data
SingleCellLineage
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
pavfinder
:mag: Post Assembly Variants Finder
Tempora
Pathway-based trajectory inference method for time-series scRNAseq data
YAMP
YAMP: Yet Another Metagenomic Pipeline
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
PopDiff_MonocyteIAV
Repository associated with the following manuscript: Basal Expression of Interferon-Stimulated Genes Drives Population Differences in Monocyte Susceptibility to Influenza Infection
SARS-CoV-2-RBD_DMS
Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
cnki-pdf-download
直接下载知网硕博文献PDF版本
sv-nf
Nextflow workflow for structural variants with graph data
wes-mapping-bwa-gatk
Map and post-process your bams for SNP calling
leafcutter-pipeline
Differential splicing and visualisation pipeline for the Raj lab