NMNS93

battenberg

Battenberg R package for subclonal copynumber estimation

dnanexus_upload_multiqc

:outbox_tray: DNAnexus applet for hosting QC reports on the Viapath server

dpclust3p

Dirichlet Process Clustering Pre-Processing Pipeline

mokapapp

:fast_forward: Sync the Viapath Genetics LIMS system with Panel App

snakepot

:tea: A snakemake wrapper for the TPOTClassifier

workstation_housekeeping

:open_file_folder: Utilities for managing data on the local NGS workstation

hdp

R pkg for Hierarchical Dirichlet Process

JellyPy

matt

Mensah_SalmonellaWGS

Salmonella Antimicrobial Resistance project at the Animal and Plant Health Agency. A comparison of AMR phenotyping methods with Whole Genome Sequencing predictions.

MRIQA

MRIQA for UCLH MPB

PHYLOG

Phylogenetics competency for Introduction to Clinical Bioinformatics (STP)

pipx

Execute binaries from Python packages in isolated environments

STP

Public repository for personal STP code

tierup_v0-3-0_2020

URQC

Ultrasound QC Project STP Rotation Y1 ICT

whale-matics