Nikolaos Kalavros's repositories
arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
biotools
A list of useful bioinformatics resources
cBioportal-Queries
Query the cBioportal datasets through the cgdsr package in order to return mutation frequencies, CNA frequencies and z-score alteration frequencies for the queried studies
CellChat_ShinyApps
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Copehnagen-biohackathon
Torch scripts
courses
fast.ai Courses
dalamagas_stuff
Solutions for the exercises in the Algorithms in Bioinformatics course of the Data Science and Information Technology M.Sc. (Biomedical Data Science Specialization)
DescTools
Tools for Descriptive Statistics and Exploratory Data Analysis
distmap
DistMap
fesetup
A tool for setting up free energy simulations.
Gene-Expression-and-Mutation-Associations
Still needs quite a lot to be worked on
harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
itbi_ex6_ad
Solutions for exercise 6 of Introduction to Bioinformatics for the DSIT M.Sc.
MUDAN
Multi-sample Unified Discriminant ANalysis
NeuralTuringMachine
Tensorflow implementation of a Neural Turing Machine
NinjaPCR
Open Thermocycler Implementation
pokebattle-rl-env
An OpenAI Gym environment for Pokemon battles
pokemon-showdown
Pokémon battle simulator.
random-dedos-stuff
Please do not look, this is shite.
rstudio
RStudio is an integrated development environment (IDE) for R
scrinvex
Single Cell RNA Intron-Exon counting
sickle
Windowed Adaptive Trimming for fastq files using quality
some-kind-of-coronavirus-assignment
Well, this is still in it's infancy.
thyroid-cancer-a-bioinformatics-approach
This repository contains everything that was used for the construction of the thesis for my B.Sc. named Elucidating the role of microRNAs in thyroid cancer oncogenesis