NCIP / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

ctat-mutations

Click the Wiki link at top for the ctat-mutation documentation.

Easiest to use leveraging Docker or Singularity: https://github.com/NCIP/ctat-mutations/wiki/ctat_mutations_docker_singularity

Otherwise, tTo download the software, click the 'Releases' tab and download the tar.gz.

Note, if you're going to clone the code from github, do it recursively like so:

git clone --recursive https://github.com/NCIP/ctat-mutations.git