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NCBI-Hackathons
/
Pharmacogenomics_Prediction_Pipeline_P3
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NCBI-Hackathons/Pharmacogenomics_Prediction_Pipeline_P3 Issues
Include system information in pipeline output
Updated
8 years ago
proposal: work on branches from main repo rather than forks
Closed
8 years ago
Comments count
2
Improve performance of results visualization
Updated
8 years ago
Extensions to results visualization template
Updated
8 years ago
Filter out compounds with low variance/range across all cell lines
Updated
8 years ago
Comments count
2
Add snakemake rules to generate output reports
Closed
8 years ago
Comments count
1
Add support for adjusting visualizations based on available sample metadata
Updated
9 years ago
Comments count
1
visualization
Updated
9 years ago
Comments count
5
Create a Shiny App to visualize P3 data and results
Updated
9 years ago
config files
Closed
9 years ago
Comments count
6
Merge tools/ and src/ and reorganize pipeline components
Updated
9 years ago
Comments count
1
Add sample datasets that work out-of-the-box with the pipeline
Closed
9 years ago
Comments count
9
Normalize input and intermediate data sources
Updated
9 years ago
Comments count
5
Check for required software before running pipeline
Updated
9 years ago
P3 Post-hackathon Refactoring
Updated
9 years ago
Comments count
6
Generalize functional/pathway analysis scripts
Closed
9 years ago
Comments count
3
high-level architecture
Updated
9 years ago
Comments count
2
Write unit tests
Updated
9 years ago
Move all project-specific settings (filepaths, etc) to a config.yaml file
Updated
9 years ago
Test
Closed
9 years ago
Comments count
1