NCATSTranslator / reasoner-validator

Validation of Translator OpenAPI (TRAPI) messages both to TRAPI and Biolink Model standards. See https://ncatstranslator.github.io/reasoner-validator/

NCATSTranslator/reasoner-validator Issues

Future Biolink Model 4.2 validation support
Updated 7 months ago
Enhancing Biolink Model validation to the latest release 4.2.0
Closed 7 months ago1
TRAPI 1.5 support and enhanced TRAPI version resolution
Updated 8 months ago
Should a 'skipped' message partition be added into the codes.yaml?
Closed 8 months ago1
TRAPI and Biolink Model versions reported slightly differently
Updated 9 months ago
Detect 'dangling nodes/edges' by iterating through node <-> edge mappings)
Closed a year ago6
Add 'biolink:interacts_with' as an 'exceptional' mixin predicate to be warning not errors
Closed a year ago1
Observations from the UI MVP front lines...
Closed a year ago9
Deeper validation of TRAPI workflow specifications
Updated a year ago1
Fix Qualifier value validation (driven by specific use case)
Closed a year ago1
Reasoner Validator is altering the dictionary objects upon validation
Closed a year ago1
Can some clever caching of schemas speed things up?
Updated a year ago
GitHub API limits causes Reasoner Validator to occasionally fail upon import
Closed a year ago3
Capture and use the 1.4.0 TRAPI Response biolink_version and (TRAPI) schema_version declarations
Closed a year ago5
Validation of edge qualifier values is incomplete
Closed a year ago3
Abstract/mixin categories should be totally ignored in lists of node categories that include a concrete category
Closed a year ago1
Can abstract class category error be made into a warning instead?
Closed a year ago21
Review all TRAPI models 'object' contexts for 'nullable: true' directives that allow for missing keys without error
Closed a year ago1
Why global?
Closed a year ago5
Agent type and knowledge level?
Closed a year ago5
Can we report the source?
Closed a year ago11
Should we distinguish validation between critical versus simple errors
Closed 2 years ago4
Extend ARS script
Closed 2 years ago1
Why is EDAM-DATA: unknown to Biolink?
Closed 2 years ago6
If a TRAPI Attribute is received with "value: None" (or null) this should trigger a validation error
Closed 2 years ago14
Allow the user to specify a local schema
Closed 2 years ago3
Deleting node ids?
Closed 2 years ago1
Issue with dependencies
Closed 2 years ago6
Placeholder issue reflecting feedback from Eric Deutsch
Closed 2 years ago2
An empty knowledge graph may be an error in some use cases
Closed 2 years ago1
Add full Biolink Model release 3.0.2++ validation support; iterate on future model releases
Closed 2 years ago1
Convert dependency management to poetry
Closed 2 years ago1
dependence issue
Closed 2 years ago3
Reasoner Validator yielding incorrect errors for primary_knowledge_source in TRAPI 1.4
Closed 2 years ago3
Add ability to pass a URL or schema dictionary to TRAPISchemaValidator.validate so it can be used to test example data that corresponds to changes in the ReasonerAPI specification on PR.
Closed 2 years ago6
add descriptions to validation messages in codes.yaml
Closed 2 years ago1
Duplication in ValidationReporter messages
Closed 2 years ago1
direction_qualifier errors?
Closed 2 years ago5
crash if workflow is null
Closed 2 years ago1
crash trying to validate TRAPI response
Closed 2 years ago4
check_compliance_of_trapi_response() only works with Message not Response
Closed 2 years ago2
New 'recommendations' view needs a new web API endpoint
Closed 2 years ago1
Fix documentation
Closed 2 years ago1
check_compliance_of_trapi_response() should validate the whole TRAPI Response object, not just the Message part
Closed 2 years ago1
Semantic check for error.node.categories_not_array not right?
Closed 2 years ago2
Tests broken since release 3.0.0
Closed 2 years ago2
Better to brand 'QNode' context errors with 'QNode' rather than just 'Node'
Closed 2 years ago1
error code with made-up predicate
Closed 2 years ago5
Is this a bug?
Closed 2 years ago2
Trouble validating TRAPI 1.3-beta
Closed 2 years ago2